'I dislike Shimano pads as well, though I don't think the damage they do to the rims is not as bad as it looks. I just think there are better ones. I think you were unlucky with he tyres. The 700c version (with the same sidewall) is a favorite with many Audax mile eaters, because it's so long lasting. I used my summer Hi Roads till the tread had gone and my winter TGs have done 4,000 miles plus over the winters.' From PH
I agree with you regarding the Panaracers. Sidewall punctures are rare and I am sure it was just coincidence that it happened so soon to me but the sidewall is thin relative to other tyres, which is why they are lighter. There are too many good reviews (like yours) for my experience to be typical and they gave a very nice ride, but once bitten, twice shy.
The lumps of Al stripped from the rims by the brake blocks was a more worrying problem. The rims were definitely scratched quite deeply in places, (mainly where the Al nodules that became embedded in the blocks cut in to the rims again). Hopefully I've solved the problem early enough before it significantly weakens the rims. I'll have a look for koolstop cartridges as folks above recommend.
No surprise that the RT was touring bike of the year, it would probably also have won the best allrounder if there was such a category.