Ah, yes been there! Start with the easy bits and I suggest working outside in. Check pedals (remove, grease and tighten), if possible try and pedal with one leg to isolate the noise. If still no joy remove cranks, grease and refit (some folk argue against greasing). Then remove EBB and grease, check for channel marks where the bolts have slipped. Finally if still no joy try removing the BB. I'd advise against trying to do this in the frame as there is a risk of it moving and scoring the EBB, but it can work. External BBs would be easier I guess.
Good luck, (you'll probably discover it is the saddle...)!