it's a pity the OP hasn't been back with an update, either here or on the CTC forum where they posed the same question. Maybe they found the answer somewhere else. I hope they haven't concluded there's a problem.
Has anyone ever measured the wattage of a spinning unloaded wheel? It must be tiny. I have spun one with and without a tyre on, there's a considerable difference, flywheel effect? By the time the wheel's being ridden, I suspect that added drag in the hub, which must exist, will be too small to notice.
I've played around with freewheeling down a hill on various bikes, not enough examples or consistency to be conclusive, but anecdotally, wheel size made the biggest difference, followed by tyre size and pressure. There was no measurable difference between my Rohloff and derailleur touring bikes at a similar weight and the same tyres. Yet spinning those wheels on a stand is completely different.